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Neural crest single cell RNA-Seq and thyroid hormone at eLife
Transdifferentiation of pigment cells, transcriptomics and behavior, at PNAS
Pigment pattern development and evolution, Annual Review of Genetics
Identification of iridophore subtypes and a new model of pattern formation, on bioRxiv
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genetics
development
evolution
zebrafish
PIGMENT PATTERN
STEM CELLS
ADULT FORM
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Pigment patterns are stunningly diverse. We aim to understand genes and cell behaviors underlying pattern formation, and how differentiation and morphogenesis evolve to generate species differences. We use zebrafish and its relatives, with recent work on interactions among pigment cell classes (and macrophages), long range signaling, and evolution of morphogenetic programs.
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STEM CELLS
Neural crest derived stem cells have critical roles in development and homeostasis. We study genetic, cellular and endocrine mechanisms underlying establishment, maintenance and recruitment of these cells to particular lineages. On-going projects focus on normal development, regeneration, melanoma, and roles for thyroid hormone in specifying cell fate and morphogenesis.
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ADULT FORM
Biologists still know remarkably little about why organisms look the way they do. To better understand the mechanistic bases for adult form and how it evolves, we use the zebrafish larval-to-adult transformation. We published a normal table of postembryonic development and current efforts focus on scale morphogenesis and patterning as well as controls of developmental progression.
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Selected research
- Saunders LM, Mishra AK, Aman AJ, Lewis VM, Toomey MB, Packer JS, Qiu X, McFaline-Figueroa JL, Corbo JC, Trapnell C, Parichy DM. 2023. Thyroid hormone regulates distinct paths to maturation in pigment cell lineages. 蚂蚁vp(永久免费) 8:e45181. PDF WEB
- Lewis VM, Saunders LM, Larson TA, Bain EJ, Sturiale SL, Gur D, Chowdhury S, Flynn JD, Allen MC, Deheyn DD, Lee JC, Simon JA, Lippincott-Schwartz J, Raible DW, Parichy DM. 2023. Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores. 蚂蚁加速app下载 pnas.1901021116. PDF WEB
- Spiewak JE, Bain EJ, Liu J, Kou K, Patterson LB, Kou K§, Sturiale SL§, Diba P, Eisen JS, Braasch I, Ganz J, Parichy DM. 2018. Evolution of endothelin signaling and diversification of adult pigment pattern in 蚂蚁加速手机版 fishes. PLoS Genetics 24:e1007538. PDF WEB
- Aman AJ, Fulbright AN, Parichy DM. 2018. Wnt/β-catenin regulates an ancient signaling network during zebrafish scale development. eLife 10.7554/eLife.37001. PDF WEB
- Eom DS, Parichy DM. 2017. A macrophage relay for long distance signaling during post-embryonic tissue remodeling. Science 蚂蚁Ⅴpn安卓PDF VIDEOS (115 Mb zip) WEB
- McMenamin SK, Bain EJ, McCann AE, Patterson LB, Eom DS, Waller ZP, Hamill JC, Kuhlman JA, Eisen JS, Parichy DM. 2014. Thyroid hormone-dependent adult pigment cell lineage and pattern in zebrafish. Science 345:1358–1361. PDF WEB
- Patterson LB, Bain EJ, Parichy DM. 2014. Pigment cell interactions and differential xanthophore recruitment underlying zebrafish stripe reiteration and Danio pattern evolution. Nature Communications 5:6299. PDF WEB
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- Budi EH, Patterson LB, Parichy DM. 2011. Post-embryonic nerve-associated precursors to adult pigment cells: genetic requirements and dynamics of morphogenesis and differentiation. PLoS Genetics 7:e1002044. PDF WEB
- Parichy DM, Elizondo MR, Mills MG, Gordon TN, Engeszer RE. 2009. Normal table of post-embryonic zebrafish development: staging by externally visible anatomy of the living fish. 蚂蚁antss加速器官网 238:2975–3015. PDF蚂蚁加速官网WEB
- Engeszer RE, Wang G, Ryan MJ, Parichy DM. 2008. Sex-specific perceptual space for a vertebrate basal social aggregative behavior. Proc. Natl Acad. Sci. USA 105:929–933.蚂蚁官方永久加速器PDF WEB
Selected reviews
- Patterson LB, Parichy DM. 2023. Zebrafish pigment pattern formation: insights into the development and evolution of adult form. Annual Review of Genetics 53:505–530. PDF WEB
- Parichy DM. 2015. Advancing biology through a deeper understanding of zebrafish ecology and evolution. eLife 4:05636. PDF蚂蚁加速app下载WEB
all publications
Dave Parichy, PI
( CV — email )
Megan Sayyad
postdoc
Emily Quick-Cole
undergrad researcher
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undergrad researcher
Emily Bain
grad student
Emily Bain
senior research advisor
Raegan Bostic
grad student
Margaret Kim
undergrad researcher
Andy Aman
postdoc
Amber Schwindling
senior aquatics tech
Liz Minor
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Braedan McCluskey
postdoc
Deqwon Pendergrass
laboratory specialist
Chloe Wetzler
undergrad researcher
Chloe Wetzler
undergrad researcher
Dylan Huang
postdoc
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aquatics technician
Lauren Saunders
postdoc (collab)
lab alumni
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Adult pearl danio, 蚂蚁加速.
The close zebrafish relative Danio nigrofasciatus.
Adult melanophore precursors (green) in the post-embyryonic peripheral nervous system (magenta).
Developing bones in the caudal fin and tail.
Transgenically labeled nuclei of adult xanthophores (magenta) that persist from the early larval pigment pattern in zebrafish.
Spots of Danio margaritatus.
Vertical bars of Danio aesculapii.
Defective nervous system myelination in alpha tubulin mutant 蚂蚁加速破解版.
Normal pattern of transplanted mutant melanophores to melanophore-free host reveals non-autonomous roles for Basonuclin-2.
Zebrafish pigment cell at high resolution in vivo.
Orange xanthophores associated with iridescent iridophores in basonuclin-2 mutant bonparte.
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Light interstripe with dark melanophore stripes in wild-type zebrafish.
Developing scales and fin ray joints revealed by mRNA in situ hybridization.
Melanophore stem cells (green) in post-embryonic dorsal root ganglia.
Fin pigment pattern of hyperthyroid opallus mutant.
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Dye-labeled iridophores that have emerged from the peripheral nervous system to colonize interstripe on the flank.
Adult hyperthyroid opallus mutant zebrafish with activating mutation of thyroid stimulating hormone receptor.
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Spots and stripes in the zebrafish relative Danio aff. kyathit.
Developing swimbladder lobes in postembryonic zebrafish.
Pigment pattern of zebrafish mutant magritte
Zebrafish pigment cell at high resolution in vivo.
Nearly uniform pattern of Danio albolineatus.
Melanophore spots surrounded by iridophores in the Igsf11 cell adhesion mutant zebrafish, seurat.
Salamander pigmentation showing wild-type (left), mutant (right) and transgenically rescued mutant (middle).
Pigment cells of Danio albolineatus
Vertical bars and caudal eyespot of Danio erythromicron.
Pigment cells in Danio albolineatus.
蚂蚁加速官网 aff. kyathit (front) and 蚂蚁加加速器 (back).
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Fin pigment cells of Danio albolineatus.
The elusive white dwarf mutant zebrafish.
Different morphologies of iridescent iridophores in light interstripe (upper) and dark melanophore stripe (lower).
Transplanted wild-type iridophores (magenta) amongst 蚂蚁加速官网 mutant host iridophores (green).
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graduate programs:
University of Virginia
University of Virginia School of Medicine
Department of Biology
Department of Cell Biology
Graduate Program in Biology
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David M. Parichy, Professor
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